Reading List for Environmental Microbiology (METX250)
Bartoloni, A., F. Bartalesi, A. Mantella, E. Dell’Amico, M. Roselli, M. Strohmeyer, H. G. Barahona, V. P. Barrón, F. Paradisi & G. M. Rossolini, (2004) High prevalence of acquired antimicrobial resistance unrelated to heavy antimicrobial consumption. J Infect Dis 189: 1291-1294.
Beja, O., L. Aravind, E. V. Koonin, M. T. Suzuki, A. Hadd, L. P. Nguyen, S. Jovanovich, C. M. Gates, R. A. Feldman, J. L. Spudich, E. N. Spudich & E. F. DeLong, (2000) Bacterial rhodopsin: Evidence for a new type of phototrophy in the sea. In: Science. pp. 1902-1906.
Bencheikh-Latmani, R., S. M. Williams, L. Haucke, C. S. Criddle, L. Wu, J. Zhou & B. M. Tebo, (2005) Global transcriptional profiling of Shewanella oneidensis MR-1 during Cr(VI) and U(VI) reduction. Appl Environ Microbiol 71: 7453-7460.
Bond, D. R., D. E. Holmes, L. M. Tender & D. Lovley, (2002) Electrode-reducing microorganisms that harvest energy from marine sediments. Science 295: 483-485.
Esteve-Núñez, A., J. Sosnik, P. Visconti & D. Lovley, (2008) Fluorescent properties of c-type cytochromes reveal their potential role as an extracytoplasmic electron sink in Geobacter sulfurreducens. Environ Microbiol 10: 497-505.
Gorby, Y. A., S. Yanina, J. S. McLean, K. M. Rosso, D. Moyles, A. Dohnalkova, T. J. Beveridge, I. S. Chang, B. H. Kim, K. S. Kim, D. E. Culley, S. B. Reed, M. F. Romine, D. A. Saffarini, E. A. Hill, L. Shi, D. A. Elias, D. W. Kennedy, G. Pinchuk, K. Watanabe, S. Ishii, B. Logan, K. H. Nealson & J. K. Fredrickson, (2006) Electrically conductive bacterial nanowires produced by Shewanella oneidensis strain MR-1 and other microorganisms. Proc Natl Acad Sci USA 103: 11358-11363.
Jiang, S. C., W. Chu, B. Olson, J. W. He, S. Choi, J. Zhang, J. Le & P. Gedalanga, (2007) Microbial source tracking in a small southern California urban watershed indicates wild animals and growth as the source of fecal bacteria. Appl Microbiol Biotechnol 76: 927-934.
Khatib, L. A., Y. L. Tsai & B. H. Olson, (2002) A biomarker for the identification of cattle fecal pollution in water using the LTIIa toxin gene from enterotoxigenic Escherichia coli. Applied Microbiology and Biotechnology 59: 97-104.
Khatib, L. A., Y. L. Tsai & B. H. Olson, (2003) A biomarker for the identification of swine fecal pollution in water, using the STII toxin gene from enterotoxigenic Escherichia coli. Applied Microbiology and Biotechnology 63: 231-238.
Lanthier, M., K. Gregory & D. Lovley, (2008) Growth with high planktonic biomass in Shewanella oneidensis fuel cells. FEMS Microbiology Letters 278: 29-35.
Mouser, P. J., D. E. Holmes, L. A. Perpetua, R. DiDonato, B. Postier, A. Liu & D. Lovley, (2009) Quantifying expression of Geobacter spp. oxidative stress genes in pure culture and during in situ uranium bioremediation. ISME J 3: 454-465.
Pallecchi, L., C. Lucchetti, A. Bartoloni, F. Bartalesi, A. Mantella, H. Gamboa, A. Carattoli, F. Paradisi & G. M. Rossolini, (2007) Population structure and resistance genes in antibiotic-resistant bacteria from a remote community with minimal antibiotic exposure. Antimicrobial Agents and Chemotherapy 51: 1179-1184.
Taillefert, M., J. S. Beckler, E. Carey, J. L. Burns, C. M. Fennessey & T. J. DiChristina, (2007) Shewanella putrefaciens produces an Fe(III)-solubilizing organic ligand during anaerobic respiration on insoluble Fe(III) oxides. J Inorg Biochem 101: 1760-1767.
Supplemental Readings
Gralnick, J. A. & D. K. Newman, (2007) Extracellular respiration. Mol Microbiol 65: 1-11.
Katharine, G. F. & M. Samadpour, (2007) Fecal source tracking, the indicator paradigm, and managing water quality. Water Research 41: 3517-3538.
Levy, S. B. & B. Marshall, (2004) Antibacterial resistance worldwide: causes, challenges and responses. Nature Medicine 10: S122-S129
Lloyd, J. R., (2003) Microbial reduction of metals and radionuclides. Fems Microbiology Reviews 27: 411-425.
Oremland, R. S., D. G. Capone, J. F. Stolz & J. Fuhrman, (2005) Whither or wither geomicrobiology in the era of ‘community metagenomics’. Nat Rev Microbiol 3: 572-578.
Unden, G. & J. Bongaerts, (1997) Alternative respiratory pathways of Escherichia coli: energetics and transcriptional regulation in response to electron acceptors. Biochim Biophys Acta1320: 217-234.
Watanabe, K., (2008) Recent developments in microbial fuel cell technologies for sustainable bioenergy. J Biosci Bioeng 106: 528-536.
